Jacques Fattaccioli MesoBioLab · CPCV · IPGG

Publications

Peer-reviewed articles, preprints, book chapters, patents and open-source software. The list is generated from a single data file (_data/publications.yml).

Profiles: ORCID · * corresponding author

Selected publications

  • Alcanivorax borkumensis Biofilms Enhance Oil Degradation By Interfacial Tubulation M. Prasad, N. Obana, S.-Z. Lin, K. Sakai, C. Blanch-Mercader, J. Prost, N. Nomura, J.-F. Rupprecht*, J. Fattaccioli*, A. S. Utada* Science 381, 748–753 (2023) DOI Perspective: Bacteria stretch and bend oil to feed their appetite, T. McGenity and P.-P. Laissue News in Physics Today: How bacteria help clean up oil spills
  • Phenotyping Polarization Dynamics Of Immune Cells Using A Lipid Droplet–Cell Pairing Microfluidic Platform L. Pinon, N. Ruyssen, J. Pineau, O. Mesdjian, D. Cuvelier, R. Allena, S. Asnacios, A. Asnacios, P. Pierobon*, J. Fattaccioli* Cell Reports Methods (2022) DOI
  • Design of a microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplast development and physiology K. Sakai, F. Charlot, T. Le Saux, S. Bonhomme, F. Nogué, J.C. Palauqui*, J. Fattaccioli* Plant Methods 15, 19 (2019) DOI Highlighted in La Recherche (Nov. 2019)
  • A multiparametric, quantitative and high-throughput assay to determine the influence of target size on phagocytic uptake L. Montel, L. Pinon, J. Fattaccioli* Biophysical Journal 117 (3), 408–419 (2019) DOI

Preprints and articles under review

  • More Than a Drop: Programming the Emulsion Interface to Build, Mimic, and Sense H. Uhl, J. Fattaccioli Current Opinion in Colloid & Interface Science Invited review — Under review
  • Phagocytosis by the Macrophage Mannose Receptor relies on AMPK to control microtubules and actin dynamics C. Pompili, M. Depierre, S. Debrais, H. MC von Giesen, H. Uhl, V. Mignon, B. Saubamea, M. Foretz, B. Viollet, B. Dumat, J.-M. Mallet, J. Fattaccioli, F. Niedergang Journal of Cell Science — Under review
  • Spatiotemporal Light Modulation for Optical Sectioning, Diffusion Measurement and Parallelized Experiments with a Dual-DMD Microscope I. Coghill, F. Pham, M. Mandal, A. Lahlou, Y. Shpinov, J. Fattaccioli, T. Le Saux, L. Jullien Optica Open — Preprint DOI
  • Shaping, Degradation And Drug Release Of Biosourced Particles Made From Acrylated Vegetable Oils C. Hu, E. Lu, L. Lacour, N. Delsuc, B. Bresson, J.-M. Mallet, J. Fattaccioli ChemRxiv DOI

Articles and proceedings

2026

  • 37 Targeted fluorescent lipid microparticles for quantitative measurement of phagosomal pH S. Michelis‡, H. Uhl‡, F. Niedergang, J. Fattaccioli, B. Dumat*, J.-M. Mallet* Chemistry – A European Journal e71237 (2026) DOI‡ equal contribution

2025

  • 36 Fully integrated automatic microfluidic setup for immobilization, analysis and non-selective release of particles A. Chargueraud, L. Kool, J. Fattaccioli* Micro and Nano Engineering In Press (2025) DOI
  • 35 A microfluidic platform for actin-based membrane remodeling reveals the stabilizing role of branched actin networks on lipid microdomains L. Huang, R. Lopes Dos Santos, S. Labdi, G. Lamour, O. Maciejak, M. Malo, J. Fattaccioli, C. Campillo Small Science 2500210 (2025) DOI
  • 34 The Q-Warg Pipeline: A Robust and Versatile Workflow for Quantitative Analysis of Protoplast Culture Conditions L. Bogdziewiez, R. Froeling, P. Schoppl, J. Juquel, J. Antoniadi, V. Skalicky, A. Mathey, J. Fattaccioli, J. Sprakel, S. Verger Plant Direct 9 (7), e70090 (2025) DOI
  • 33 Assessing ultrasonic and optical flow velocimetry in a millifluidic device using oil-in-water emulsions as blood mimicking fluid E. Lu, W. Flores Cisternas, H. Uhl, A. Chargueraud, Q. Grimal, G. Renaud, J.-G. Minonzio, J. Fattaccioli* Micro and Nano Engineering 100298 (2025) DOI
  • 32 Spanwise dispersion optimizes the efficiency of dense microfluidic trap arrays N. Ruyssen*, G. Fina, R. Allena, M.C. Jullien, J. Fattaccioli Computers & Fluids 106643 (2025) DOI

2024

  • 31 Functionalization of microbubbles in a microfluidic chip for biosensing applications M. Prudhomme, C. Lakhdar, J. Fattaccioli, F. Chollet* Biomedical Microdevices 26, 39 (2024) DOI
  • 30 IpaA reveals distinct modes of vinculin activation during Shigella invasion and cell-matrix adhesion B. Cocom-Chan, H. Khakzad, M. Konate, D. Isui-Aguilar, C. Bello, C. Valencia-Gallardo, Y. Zarrouk, J. Fattaccioli, A. Mauviel, D. Javelaud, G. Tran Van Nhieu Life Science Alliance 7 (8) e202302418 (2024) DOI
  • 29 FRET-sensing of receptor binding at the interface of targeted biomimetic microparticles functionalized with tunable fluorescent lipids S. Michelis, C. Pompili, B. Dumat, F. Niedergang, J. Fattaccioli, J.-M. Mallet ACS Applied Bio Materials DOI

2023

2022

  • 27 Phenotyping Polarization Dynamics Of Immune Cells Using A Lipid Droplet–Cell Pairing Microfluidic Platform L. Pinon, N. Ruyssen, J. Pineau, O. Mesdjian, D. Cuvelier, R. Allena, S. Asnacios, A. Asnacios, P. Pierobon*, J. Fattaccioli* Cell Reports Methods (2022) DOI
  • 26 Microtubules restrict F-actin polymerization to the immune synapse via GEF-H1 to maintain polarity in lymphocytes J. Pineau, L. Pinon, O. Mesdjian, J. Fattaccioli, A.-M. Lennon-Duménil, P. Pierobon* eLife (2022) DOI

2021

  • 25 Enhancing the capture efficiency and homogeneity of single-layer flow-through trapping microfluidic devices using oblique hydrodynamic streams O. Mesdjian‡, N. Ruyssen‡, M.-C. Jullien, R. Allena, J. Fattaccioli* Microfluidics and Nanofluidics 25, 91 (2021) DOI‡ equal contribution

2019

  • 24 Mannose-coated fluorescent emulsion droplets: specific biosensors for Mannose Receptor-induced phagocytosis B. Dumat‡, L. Montel‡, P. Matton, L. Pinon, L. Cattiaux, J. Fattaccioli*, J.M. Mallet* ACS Applied Bio Materials 2, 11, 5118–5126 (2019) DOI‡ equal contribution
  • 23 Design of a microfluidic and microscopic toolbox for the ultra-wide spatio-temporal study of plant protoplast development and physiology K. Sakai, F. Charlot, T. Le Saux, S. Bonhomme, F. Nogué, J.C. Palauqui*, J. Fattaccioli* Plant Methods 15, 19 (2019) DOI Highlighted in La Recherche (Nov. 2019)
  • 22 A multiparametric, quantitative and high-throughput assay to determine the influence of target size on phagocytic uptake L. Montel, L. Pinon, J. Fattaccioli* Biophysical Journal 117 (3), 408–419 (2019) DOI
  • 21 Introducing digital microfluidics concepts in chemistry using a macroscopic droplet generator C. Vié, J. Fattaccioli*, P. Jacq* Journal of Chemical Education 96 (4), 797–800 (2019) DOI
  • 20 Point mutations lead to increased levels of c-di-GMP and phenotypic changes to colony biofilm morphology in Alcanivorax borkumensis SK2 M. Prasad, N. Obana, K. Sakai, Y. Nakayama, S. Miyazaki, M. Toyofuku, J. Fattaccioli, N. Nomura, A.S. Utada* Microbes and Environments 34 (1), 104–107 (2019) DOI

2018

  • 19 Kinetically-enhanced fabrication of homogeneous biomimetic and functional emulsion droplets L. Pinon, L. Montel, O. Mesdjian, M. Bernard, A. Michel, C. Ménager, J. Fattaccioli* Langmuir 34 (50), 15319–15326 (2018) DOI
  • 18 Electro-capture of heavy metal ions with carbon cloth integrated microfluidic devices F.M. Allioux*, P. Kapruwan, N. Milne, L. Kong, J. Fattaccioli, Y. Chen, L.F. Dumée* Separation and Purification Technology 194, 26–32 (2018) DOI

2016

  • 17 Nanometric emulsions encapsulating solid particles as alternative carriers for intracellular delivery S. Quignard*, G. Frébourg, Y. Chen, J. Fattaccioli* Nanomedicine 11 (16), 2059–2072 (2016) PDF
  • 16 On-chip quantitative measurement of mechanical stresses during cell migration with emulsion droplets D. Molino, S. Quignard, C. Gruget, F. Pincet, Y. Chen, M. Piel, J. Fattaccioli* Scientific Reports 6, 29113 (2016) DOI
  • 15 Luminescent and absorptive metal-coated emulsions for micro-velocimetry O. Mesdjian, Y. Chen, J. Fattaccioli* Microelectronic Engineering 158, 69–74 (2016) DOI

2015

  • 14 Phagocytosis of immunoglobulin-coated emulsion droplets K. Ben M'Barek, D. Molino, S. Quignard, Y. Chen, P. Chavrier, J. Fattaccioli* Biomaterials 51, 270–277 (2015) DOI

2014

  • 13 UV-induced fluorescence of polydopamine-coated emulsion droplets S. Quignard, Y. Chen, M. d'Ischia, J. Fattaccioli* ChemPlusChem 79 (9), 1254–1257 (2014) DOI Highlighted in Wiley-VCH Hot Topics – Surfaces and Interfaces
  • 12 Fluorescent microparticles fabrication through chemical coating of O/W emulsion droplets with a thin metallic film G.M. Nocera, K. Ben M'Barek, D.G. Bazzoli, G. Fraux, M. Bontems-Van Heijenoort, J. Chokki, S. Georgeault, Y. Chen, J. Fattaccioli* RSC Advances 4 (23), 11564–11568 (2014) DOI
  • 11 Spatially-controlled crystallization in microfluidics chambers C. Longuet, A. Yamada, Y. Chen, D. Baigl, J. Fattaccioli* Journal of Crystal Growth 386, 179–182 (2014) DOI

2012

  • 10 Fabrication of aluminum/alumina patterns using localized anodization of aluminum J.H. Park, J. Fattaccioli, H. Fujita, B.J. Kim International Journal of Precision Engineering and Manufacturing 13 (5), 765–770 (2012) DOI

2009

  • 9 Active transport of oil droplets along oriented microtubules by kinesin molecular motors C. Bottier, J. Fattaccioli, M.C. Tahran, R. Yokokawa, F.O. Morin, D. Collard, H. Fujita Lab on a Chip 9, 1694–1700 (2009) DOI
  • 8 Localized anodization of aluminum for the formation of high aspect ratio aluminum/alumina patterns J.H. Park, J. Fattaccioli, N. Takama, H. Fujita, B.J. Kim ASPEN'2009 — Asian Society for Precision Engineering and Nanotechnology Conference PDF
  • 7 Visual observation of a PDMS tip in liquid microcontact printing J. Fattaccioli, A. Ikeda, J.G. Kim, N. Takama, B.J. Kim IEEE MEMS'2009 Conference Proceedings, pp. 681–684 DOI
  • 6 Surface-temperature control of silicon nanowires in dry and liquid conditions S. Akiyama, Y.T. Cheng, J. Fattaccioli, N. Takama, P. Löw, C. Bergaud, B.J. Kim IEEE MEMS'2009 Conference Proceedings, pp. 567–570 DOI

2008

  • 5 Size and fluorescence measurements of individual droplets by flow cytometry J. Fattaccioli*, J. Baudry, E. Bertrand, C. Goubault, N. Henry, J. Bibette Soft Matter 5, 2232–2238 (2008) DOI
  • 4 Specific wetting probed with biomimetic droplets J. Fattaccioli*, J. Baudry, F. Brochard-Wyart, N. Henry, J. Bibette Soft Matter 4, 2434–2440 (2008) DOI
  • 3 Surface-temperature mapping on suspended silicon nanowire using fluorescent thermometry under dry and liquid conditions Y.T. Cheng, J. Fattaccioli, S. Akiyama, N. Takama, Y. Akagi, S.J. Cho, B.J. Kim MNE 2008 — Micro and Nano Engineering Conference PDF
  • 2 Direct transportation and electrofusion of oil droplets in a microfluidic device C. Bottier, M.C. Tahran, J. Fattaccioli, F.O. Morin, B.J. Kim, H. Fujita IEEE MEMS'2008 Conference Proceedings, pp. 563–566 DOI

2005

  • 1 Encapsulation of magnetic and fluorescent nanoparticles in emulsion droplets S.K. Mandal, N. Lequeux, B. Rotenberg, M. Tramier, J. Fattaccioli, J. Bibette, B. Dubertret Langmuir 21, 4175–4179 (2005) DOI

Book chapters and methods

  • B3 Targeted fluorescent lipid microparticles for quantitative measurement of phagosomal pH C. Pompili, H. Uhl, S. Michelis, B. Dumat, J.-M. Mallet, J. Fattaccioli, F. Niedergang Methods & Protocols — Exocytosis and Endocytosis (2026, In Press)
  • B2 Lipid droplet–based passive tracking to probe tissue dynamics in lymph node slices L. Bruno, H. Uhl, L. Vimeux, M. Karnat, J.-F. Rupprecht, E. Donnadieu, J. Fattaccioli, P. Pierobon Methods in Molecular Biology: Real-Time Imaging of Immune Cells (2026, In Press)
  • B1 Functionalized lipid droplets and microfluidics approach to study immune cell polarity in vitro J. Pineau, L. Pinon, J. Fattaccioli*, P. Pierobon* The Immune Synapse (C.T. Baldari, M.L. Dustin, eds.) Methods in Molecular Biology, vol. 2654, Humana, New York (2023) DOI

Patents

  • P5 Method for manufacturing acrylated epoxidized plant oil particles J. Fattaccioli, C. Hu WO2023237670A1 (PCT/EP2023/065379, 2023) — EP4536788A1 pending Espacenet
  • P4 Colloidal particles homogeneously functionalized by biomolecules J. Fattaccioli, L. Pinon, L. Montel EP4344770A2 (EP24157456.5A, priorité 2018, publication 2024) — Pending Espacenet
  • P3 Méthode de dépôt de polymère sur des particules liquides J. Fattaccioli PCT/FR2014/050461 — WO2014132012A1 (2013) Espacenet
  • P2 Émulsions fluorescentes pour l'imagerie optique M. Goutayer, I. Texier-Nogues, J. Fattaccioli, J. Bibette WO2008125747A2 (2008) PDF
  • P1 Cylindrical coil, cylindrical micromotor and production method of cylindrical coil K. Nakamura, T. Sonobe, H. Fujita, B.J. Kim, J. Fattaccioli JP2009247191A (2009) PDF

Research software and open tools

We develop open-source tools for image analysis, microfluidics and data science in direct support of our experiments, to make analyses quantitative and reproducible. Most code used in our publications is on the lab’s GitHub organisation.

Background removal from time-lapse image stacks (ImageJ plugin) — A. Novikova, D. Sima, L. Laïmouche, J. Fattaccioli (2024). Zenodo DOI · GitHub